STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmIRibosomal RNA large subunit methyltransferase I. (393 aa)    
Predicted Functional Partners:
rnd
Ribonuclease D.
       0.819
ALJ61557.1
Hypothetical protein.
       0.813
ALJ61558.1
Hypothetical protein; VirE N-terminal domain.
       0.547
rsmE
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
 
  
 0.535
rsmF
Ribosomal RNA small subunit methyltransferase F.
 
  
 0.485
slyD
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD.
  
    0.450
xapB
Xanthosine permease.
     
 0.438
trxB
Thioredoxin reductase.
     
 0.435
spoIIIE
DNA translocase SpoIIIE.
       0.430
ALJ61561.1
Hypothetical protein.
       0.430
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.