Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALJ61662.1Hypothetical protein. (213 aa)    
Predicted Functional Partners:
ALJ62245.1
Hypothetical protein.
 
    0.730
ALJ58221.1
Glycosyl hydrolase family 10.
  
     0.724
valS
Valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.700
ALJ61816.1
Hypothetical protein.
  
     0.687
xynC_1
Glucuronoxylanase XynC precursor; Belongs to the glycosyl hydrolase 30 family.
  
     0.632
ALJ61661.1
Hypothetical protein.
       0.631
ALJ59026.1
Bacterial DNA-binding protein.
  
     0.604
ALJ60425.1
Hypothetical protein.
  
     0.600
ALJ59846.1
Hypothetical protein.
  
     0.599
ALJ61166.1
Hypothetical protein.
  
     0.593
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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