Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALJ61665.1Hypothetical protein. (369 aa)    
Predicted Functional Partners:
ALJ59389.1
Hypothetical protein.
  
  
 0.772
ALJ58755.1
Hypothetical protein.
  
     0.771
ALJ61155.1
NigD-like protein.
  
     0.771
ALJ60448.1
Hypothetical protein.
 
     0.770
ALJ58231.1
Hypothetical protein.
  
     0.768
ALJ62333.1
Hypothetical protein.
  
    0.767
ALJ61285.1
Hypothetical protein.
  
     0.765
tonB_Cterm
Hypothetical protein.
 
 
   0.755
ALJ60449.1
Tol-pal system protein YbgF.
 
   
 0.752
ALJ61825.1
Anaphase-promoting complex, cyclosome, subunit 3.
 
 
 
 0.749
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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