Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
lacZ_24Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family. (1007 aa)    
Predicted Functional Partners:
ebgA_1
Evolved beta-galactosidase subunit alpha.
  
  
  0.862
lacZ_8
Beta-galactosidase.
  
  
  0.851
lacZ_13
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
  
 
0.748
lacZ_18
Beta-galactosidase.
  
  
 
0.742
lacZ_25
Beta-galactosidase.
  
  
 
0.742
lacZ_7
Beta-galactosidase.
  
  
 
0.741
lacZ_14
Beta-galactosidase.
  
  
 
0.741
lacZ_15
Beta-galactosidase.
  
  
 
0.741
ebgA_6
Evolved beta-galactosidase subunit alpha.
  
  
 
0.741
lacZ_28
Beta-galactosidase.
  
  
 
0.741
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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