Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALJ61706.1L,D-transpeptidase catalytic domain. (342 aa)    
Predicted Functional Partners:
ALJ61707.1
Hypothetical protein.
 
   
 0.800
pbpX
Putative penicillin-binding protein PbpX.
     
 0.603
dac
D-alanyl-D-alanine carboxypeptidase precursor.
    
 0.575
ALJ59258.1
Hypothetical protein.
  
     0.566
spoVD_2
Stage V sporulation protein D.
     
 0.546
ALJ57783.1
Hypothetical protein.
 
     0.489
ALJ61300.1
Putative inner membrane protein.
 
  
 0.489
ALJ61807.1
Hypothetical protein; DUF based on B. Theta Gene description.
 
   
 0.481
ALJ59101.1
SusD family protein.
  
     0.454
mepA_7
Multidrug export protein MepA.
       0.446
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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