Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
imdIsomalto-dextranase precursor. (463 aa)    
Predicted Functional Partners:
xynB_9
Endo-1,4-beta-xylanase B precursor.
 
     0.815
ALJ61709.1
Retaining alpha-galactosidase precursor.
     
 0.777
ALJ61712.1
Hypothetical protein.
       0.735
ALJ57984.1
Hypothetical protein.
  
     0.673
ALJ57335.1
Hypothetical protein.
  
     0.656
ALJ62333.1
Hypothetical protein.
  
    0.651
ALJ60448.1
Hypothetical protein.
  
     0.643
ALJ60801.1
Fibrobacter succinogenes major domain (Fib_succ_major).
  
   
 0.637
ALJ58231.1
Hypothetical protein.
  
     0.625
ALJ61487.1
Hypothetical protein.
  
     0.593
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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