Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALJ58667.1 | ynfM | BcellWH2_01406 | BcellWH2_04565 | Hypothetical protein. | Inner membrane transport protein YnfM. | 0.426 |
ALJ61782.1 | relA_2 | BcellWH2_04567 | BcellWH2_04566 | Hypothetical protein. | GTP pyrophosphokinase. | 0.565 |
ALJ61782.1 | ynfM | BcellWH2_04567 | BcellWH2_04565 | Hypothetical protein. | Inner membrane transport protein YnfM. | 0.475 |
emrA_2 | ynfM | BcellWH2_03866 | BcellWH2_04565 | Multidrug export protein EmrA. | Inner membrane transport protein YnfM. | 0.412 |
pbpD_2 | ynfM | BcellWH2_01007 | BcellWH2_04565 | Penicillin-binding protein 4 precursor. | Inner membrane transport protein YnfM. | 0.435 |
ptpA_2 | ynfM | BcellWH2_02005 | BcellWH2_04565 | Prolyl tripeptidyl peptidase precursor. | Inner membrane transport protein YnfM. | 0.626 |
relA_2 | ALJ61782.1 | BcellWH2_04566 | BcellWH2_04567 | GTP pyrophosphokinase. | Hypothetical protein. | 0.565 |
relA_2 | ynfM | BcellWH2_04566 | BcellWH2_04565 | GTP pyrophosphokinase. | Inner membrane transport protein YnfM. | 0.671 |
ydhP_2 | ynfM | BcellWH2_05010 | BcellWH2_04565 | Inner membrane transport protein YdhP. | Inner membrane transport protein YnfM. | 0.429 |
ynfM | ALJ58667.1 | BcellWH2_04565 | BcellWH2_01406 | Inner membrane transport protein YnfM. | Hypothetical protein. | 0.426 |
ynfM | ALJ61782.1 | BcellWH2_04565 | BcellWH2_04567 | Inner membrane transport protein YnfM. | Hypothetical protein. | 0.475 |
ynfM | emrA_2 | BcellWH2_04565 | BcellWH2_03866 | Inner membrane transport protein YnfM. | Multidrug export protein EmrA. | 0.412 |
ynfM | pbpD_2 | BcellWH2_04565 | BcellWH2_01007 | Inner membrane transport protein YnfM. | Penicillin-binding protein 4 precursor. | 0.435 |
ynfM | ptpA_2 | BcellWH2_04565 | BcellWH2_02005 | Inner membrane transport protein YnfM. | Prolyl tripeptidyl peptidase precursor. | 0.626 |
ynfM | relA_2 | BcellWH2_04565 | BcellWH2_04566 | Inner membrane transport protein YnfM. | GTP pyrophosphokinase. | 0.671 |
ynfM | ydhP_2 | BcellWH2_04565 | BcellWH2_05010 | Inner membrane transport protein YnfM. | Inner membrane transport protein YdhP. | 0.429 |