STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smc_3Chromosome partition protein Smc. (658 aa)    
Predicted Functional Partners:
ALJ61837.1
Hypothetical protein.
       0.685
pknB
Serine/threonine-protein kinase PknB.
  
     0.653
wapA_3-2
FG-GAP repeat protein.
  
     0.617
ALJ60234.1
Hypothetical protein.
  
     0.615
ALJ61835.1
Hypothetical protein.
      
0.576
ALJ60398.1
Heparinase II/III-like protein.
  
     0.554
wapA_4
tRNA(Glu)-specific nuclease WapA precursor.
  
     0.516
ALJ59965.1
SusD family protein.
  
     0.494
ALJ59964.1
TonB dependent receptor.
  
     0.481
wapA_1
tRNA(Glu)-specific nuclease WapA precursor.
  
     0.474
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.