Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
pchR_1Regulatory protein PchR. (395 aa)    
Predicted Functional Partners:
rhaS
HTH-type transcriptional activator RhaS.
 
 
 
 0.799
araC_2
Arabinose operon regulatory protein.
  
     0.761
rhaR_4
HTH-type transcriptional activator RhaR.
  
     0.755
btr_1
HTH-type transcriptional activator Btr.
  
     0.749
araC_3
Arabinose operon regulatory protein.
  
     0.749
xylR_2
Xylose operon regulatory protein.
  
     0.736
chbR
HTH-type transcriptional regulator ChbR.
  
     0.734
btr_4
HTH-type transcriptional activator Btr.
  
     0.723
btr_6
HTH-type transcriptional activator Btr.
  
     0.718
araC_6
Arabinose operon regulatory protein.
  
     0.711
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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