STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccpA_2Catabolite control protein A. (351 aa)    
Predicted Functional Partners:
uxaA
Altronate dehydratase.
     
 0.848
cytR_3
HTH-type transcriptional repressor CytR.
  
     0.721
cytR_2
HTH-type transcriptional repressor CytR.
  
     0.714
gltB_2
Ferredoxin-dependent glutamate synthase 1.
   
 
 0.706
ccpA_1
Catabolite control protein A.
  
     0.705
mleN
Malate-2H(+)/Na(+)-lactate antiporter.
       0.661
afr_2
1,5-anhydro-D-fructose reductase.
 
   
 0.550
xylB_2
Xylulose kinase.
 
 
 
 0.481
kdgA
KHG/KDPG aldolase.
  
  
 0.475
ALJ57323.1
Transcriptional regulator NarL.
 
  
 0.437
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.