STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAM4_1642DNA polymerase beta domain protein region. (107 aa)    
Predicted Functional Partners:
TAM4_1580
Hypothetical protein.
 
     0.947
TAM4_1842
Phosphoesterase recJ-like containing a DHHA1 domain.
       0.795
TAM4_2386
Hypothetical protein.
       0.795
TAM4_1425
Hypothetical protein.
 
     0.760
TAM4_1893
Hypothetical protein.
 
     0.760
TAM4_654
Hypothetical protein.
 
     0.760
TAM4_1801
Conserved hypothetical protein.
       0.698
TAM4_2116
Nucleotidyltransferase.
  
     0.671
pfdB
Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.
 
     0.670
TAM4_1626
Hypothetical protein.
       0.446
Your Current Organism:
Thermococcus sp. AM4
NCBI taxonomy Id: 246969
Other names: T. sp. AM4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.