STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAM4_2000Cytochrome d ubiquinol oxidase subunit I. (507 aa)    
Predicted Functional Partners:
TAM4_2186
Cytochrome d ubiquinol oxidase subunit II.
 0.999
hemH
Ferrochelatase protoheme ferro-lyase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
 
   
 0.615
menG
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
 
     0.553
TAM4_2088
Radical SAM domain heme biosynthesis protein.
     
 0.537
TAM4_2197
Putative dehydrogenase.
 
  
 0.537
TAM4_1992
Vitamin B12 ABC transporter periplasmic B12-binding component.
       0.515
TAM4_2040
Hypothetical protein.
       0.511
TAM4_2363
4-hydroxybenzoate polyprenyltransferase.
     
 0.484
TAM4_2121
ABC transporter, periplasmic component.
       0.482
TAM4_2132
ABC transporter, permease component.
       0.482
Your Current Organism:
Thermococcus sp. AM4
NCBI taxonomy Id: 246969
Other names: T. sp. AM4
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