Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TAM4_209 | TAM4_317 | TAM4_209 | TAM4_317 | Putative PIN domain protein. | Conserved hypothetical protein. | 0.800 |
TAM4_209 | TAM4_375 | TAM4_209 | TAM4_375 | Putative PIN domain protein. | Conserved hypothetical protein. | 0.580 |
TAM4_209 | rnp3 | TAM4_209 | TAM4_287 | Putative PIN domain protein. | Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. | 0.570 |
TAM4_317 | TAM4_209 | TAM4_317 | TAM4_209 | Conserved hypothetical protein. | Putative PIN domain protein. | 0.800 |
TAM4_317 | TAM4_375 | TAM4_317 | TAM4_375 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.586 |
TAM4_317 | rnp3 | TAM4_317 | TAM4_287 | Conserved hypothetical protein. | Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. | 0.583 |
TAM4_375 | TAM4_209 | TAM4_375 | TAM4_209 | Conserved hypothetical protein. | Putative PIN domain protein. | 0.580 |
TAM4_375 | TAM4_317 | TAM4_375 | TAM4_317 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.586 |
TAM4_375 | rnp3 | TAM4_375 | TAM4_287 | Conserved hypothetical protein. | Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. | 0.844 |
rnp3 | TAM4_209 | TAM4_287 | TAM4_209 | Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. | Putative PIN domain protein. | 0.570 |
rnp3 | TAM4_317 | TAM4_287 | TAM4_317 | Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. | Conserved hypothetical protein. | 0.583 |
rnp3 | TAM4_375 | TAM4_287 | TAM4_375 | Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. | Conserved hypothetical protein. | 0.844 |