STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAM4_2103Hypothetical protein. (324 aa)    
Predicted Functional Partners:
TAM4_168
Archaeosine tRNA-ribosyltransferase type 2.
 
     0.765
TAM4_1176
Conserved hypothetical protein.
  
     0.686
TAM4_1556
Conserved hypothetical protein; Belongs to the UPF0179 family.
  
     0.677
rpl40e
LSU ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.667
TAM4_180
Hydrolase, TatD family.
  
     0.663
TAM4_2082
Transcriptional regulator, XRE family.
  
     0.639
TAM4_625
Conserved hypothetical protein.
  
     0.605
TAM4_631
Amino acid binding protein.
 
     0.598
TAM4_750
ATP-dependent protease, La Type II; Belongs to the peptidase S16 family.
  
     0.589
trmY
Conserved hypothetical protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
  
     0.580
Your Current Organism:
Thermococcus sp. AM4
NCBI taxonomy Id: 246969
Other names: T. sp. AM4
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.