STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TAM4_2139Putative K+-dependent Na+/Ca+ exchanger. (308 aa)    
Predicted Functional Partners:
TAM4_1910
Conserved hypothetical protein.
       0.897
TAM4_2080
Conserved hypothetical protein.
       0.897
tmcA
Putative p-loop ATPase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
       0.740
TAM4_1866
Fe-S oxidoreductase.
  
    0.672
TAM4_2055
Hypothetical protein.
       0.651
TAM4_676
Arsenical pump-driving ATPase.
  
   0.533
TAM4_1850
Thiamin ABC transporter, substrate-binding component.
 
     0.525
TAM4_876
NhaP type Na+/H+ antiporter.
 
 
 
 0.497
TAM4_1871
Mannose-6-phosphate isomerase.
  
    0.459
TAM4_376
Short-chain alcohol dehydrogenase.
   
   0.455
Your Current Organism:
Thermococcus sp. AM4
NCBI taxonomy Id: 246969
Other names: T. sp. AM4
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