Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| TAM4_1702 | TAM4_971 | TAM4_1702 | TAM4_971 | RNA-binding protein, containing KH domain. | rRNA biogenesis protein Nop5/Nop56. | 0.992 |
| TAM4_1702 | TAM4_991 | TAM4_1702 | TAM4_991 | RNA-binding protein, containing KH domain. | GTP-binding protein gtp1/obg family. | 0.646 |
| TAM4_1702 | rpoH | TAM4_1702 | TAM4_1695 | RNA-binding protein, containing KH domain. | DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. | 0.647 |
| TAM4_1702 | tmcA | TAM4_1702 | TAM4_2097 | RNA-binding protein, containing KH domain. | Putative p-loop ATPase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.999 |
| TAM4_1702 | trm1 | TAM4_1702 | TAM4_2149 | RNA-binding protein, containing KH domain. | tRNA N2N2-dimethyl(Guanine2,6-N2)-methyltransferase; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. | 0.636 |
| TAM4_1702 | truB | TAM4_1702 | TAM4_206 | RNA-binding protein, containing KH domain. | tRNA pseudouridine 55 synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.796 |
| TAM4_1702 | truD | TAM4_1702 | TAM4_112 | RNA-binding protein, containing KH domain. | tRNA pseudouridine synthase D; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | 0.577 |
| TAM4_2026 | rpl35ae | TAM4_2026 | TAM4_2003 | Conserved hypothetical protein. | LSU ribosomal protein L35Ae; Belongs to the eukaryotic ribosomal protein eL33 family. | 0.542 |
| TAM4_2026 | trm1 | TAM4_2026 | TAM4_2149 | Conserved hypothetical protein. | tRNA N2N2-dimethyl(Guanine2,6-N2)-methyltransferase; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. | 0.620 |
| TAM4_971 | TAM4_1702 | TAM4_971 | TAM4_1702 | rRNA biogenesis protein Nop5/Nop56. | RNA-binding protein, containing KH domain. | 0.992 |
| TAM4_971 | TAM4_991 | TAM4_971 | TAM4_991 | rRNA biogenesis protein Nop5/Nop56. | GTP-binding protein gtp1/obg family. | 0.937 |
| TAM4_971 | rpoH | TAM4_971 | TAM4_1695 | rRNA biogenesis protein Nop5/Nop56. | DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. | 0.715 |
| TAM4_971 | tmcA | TAM4_971 | TAM4_2097 | rRNA biogenesis protein Nop5/Nop56. | Putative p-loop ATPase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.999 |
| TAM4_971 | trm1 | TAM4_971 | TAM4_2149 | rRNA biogenesis protein Nop5/Nop56. | tRNA N2N2-dimethyl(Guanine2,6-N2)-methyltransferase; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. | 0.618 |
| TAM4_971 | truB | TAM4_971 | TAM4_206 | rRNA biogenesis protein Nop5/Nop56. | tRNA pseudouridine 55 synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.988 |
| TAM4_971 | truD | TAM4_971 | TAM4_112 | rRNA biogenesis protein Nop5/Nop56. | tRNA pseudouridine synthase D; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | 0.415 |
| TAM4_991 | TAM4_1702 | TAM4_991 | TAM4_1702 | GTP-binding protein gtp1/obg family. | RNA-binding protein, containing KH domain. | 0.646 |
| TAM4_991 | TAM4_971 | TAM4_991 | TAM4_971 | GTP-binding protein gtp1/obg family. | rRNA biogenesis protein Nop5/Nop56. | 0.937 |
| TAM4_991 | rpl35ae | TAM4_991 | TAM4_2003 | GTP-binding protein gtp1/obg family. | LSU ribosomal protein L35Ae; Belongs to the eukaryotic ribosomal protein eL33 family. | 0.762 |
| TAM4_991 | rpoH | TAM4_991 | TAM4_1695 | GTP-binding protein gtp1/obg family. | DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. | 0.572 |
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