Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TAM4_320TRAP transporter, 4TM/12TM fusion protein. (765 aa)    
Predicted Functional Partners:
TAM4_173
TRAP-type transporter, periplasmic component.
 
 
 0.998
TAM4_310
Conserved hypothetical protein.
       0.897
TAM4_255
Hypothetical protein.
       0.536
TAM4_82
D-arabino-3-hexulose 6-phosphate formaldehyde lyase / 6-phospho-3-hexuloisomerase.
       0.506
TAM4_315
Protein C14orf159.
 
     0.505
TAM4_2405
Hypothetical protein.
       0.421
TAM4_27
Conserved hypothetical protein.
       0.421
TAM4_279
Hydrolase, HAD superfamily.
       0.421
TAM4_258
Metal-dependent phosphohydrolase, HD superfamily.
       0.419
dtdA
Conserved hypothetical protein; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.
       0.415
Your Current Organism:
Thermococcus sp. AM4
NCBI taxonomy Id: 246969
Other names: T. sp. AM4
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