Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TAM4_554Transcriptional regulatory protein arsR family. (196 aa)    
Predicted Functional Partners:
TAM4_1650
Small heat shock protein; Belongs to the small heat shock protein (HSP20) family.
     
 0.782
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
      
 0.766
pfdA-2
Prefoldin alpha subunit (GimC alpha subunit); Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.
  
   
 0.702
TAM4_857
Hypothetical protein.
 
     0.635
TAM4_379
Phosphoserine phosphatase.
  
     0.627
TAM4_1004
Hypothetical protein.
       0.606
TAM4_625
Conserved hypothetical protein.
  
     0.579
TAM4_804
DEAD/DEAH box helicase domain protein.
  
     0.565
TAM4_168
Archaeosine tRNA-ribosyltransferase type 2.
  
     0.524
mutS2
DNA mismatch repair protein; Has ATPase and non-specific DNA-binding activities. Belongs to the DNA mismatch repair MutS family. Archaeal Muts2 subfamily.
  
     0.512
Your Current Organism:
Thermococcus sp. AM4
NCBI taxonomy Id: 246969
Other names: T. sp. AM4
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