STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAM4_580TtuB. (67 aa)    
Predicted Functional Partners:
TAM4_1131
Thiamine biosynthesis protein.
  
 
 0.882
TAM4_1711
Mov34/MPN/PAD-1 family protein.
  
 
 0.684
TAM4_440
Metal-dependent protease, Mov34/MPN/PAD-1 superfamily.
  
 
 0.633
rpl37ae
LSU ribosomal protein L37Ae; Binds to the 23S rRNA.
       0.554
TAM4_1286
ATPase, PP-loop superfamily.
  
 
 0.531
TAM4_293
tRNA(U54)-2-thioribothymidine synthetase.
  
 
 0.531
TAM4_1364
N-type ATP pyrophosphatase superfamily protein.
  
 
 0.522
TAM4_1934
N-type ATP pyrophosphatase superfamily protein.
  
 
 0.522
rpoP
DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family.
     
 0.513
TAM4_1662
Hypothetical protein.
    
   0.463
Your Current Organism:
Thermococcus sp. AM4
NCBI taxonomy Id: 246969
Other names: T. sp. AM4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.