Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TAM4_686Vitamin B12 ABC transporter B12-binding component BtuF. (629 aa)    
Predicted Functional Partners:
TAM4_2183
Vitamin B12 ABC transporter permease component.
 
 0.888
TAM4_61
iron(III) ABC transporter, permease component.
 
 0.850
TAM4_841
Iron (III) ABC transporter permease protein.
 
 0.843
TAM4_786
ABC-type iron(III)-siderophore transport system ATPase component.
 
 0.752
TAM4_327
Iron (III) ABC transporter, ATP-binding protein.
 
 0.749
TAM4_2070
Hemin import ATP-binding protein.
 
 0.713
TAM4_524
Transcription regulator, SpoVT/AbrB family containing PhoU domain.
     
 0.690
dtdA
Conserved hypothetical protein; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.
       0.519
TAM4_2063
Sulfate/thiosulfate import ATP-binding protein.
    
 0.469
TAM4_614
ATPase component NikO of energizing module of nickel ECF transporter.
    
 0.452
Your Current Organism:
Thermococcus sp. AM4
NCBI taxonomy Id: 246969
Other names: T. sp. AM4
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