STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAM4_960ABC-type Dipeptide transport system permease protein. (326 aa)    
Predicted Functional Partners:
TAM4_597
Abc transporter.
 0.993
TAM4_943
Mannoside ABC transport system ATP-binding protein 1.
 
 0.984
TAM4_2472
Mannoside ABC transport system ATP-binding protein 2.
 
 0.972
TAM4_784
ABC-type Dipeptide transport system periplasmic oligopeptide-binding protein.
 
 
 0.958
TAM4_535
Beta-galactosidase.
 
     0.910
TAM4_986
Glucosamine-6-phosphate deaminase.
       0.897
TAM4_558
Dipeptide transport system permease protein, DppC-like protein.
 0.891
TAM4_1387
ABC-type oligopeptide transport system permease protein AppC.
 
 0.870
TAM4_1409
ABC-type oligopeptide transport system, permease protein.
 
 0.855
TAM4_1126
ABC-type oligopeptide transport system, atp-binding protein AppD.
 
 0.812
Your Current Organism:
Thermococcus sp. AM4
NCBI taxonomy Id: 246969
Other names: T. sp. AM4
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