Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NFA_110Putative DNA-binding protein. (332 aa)    
Predicted Functional Partners:
NFA_120
Putative excision nuclease.
  
    0.576
NFA_100
Hypothetical protein.
  
  
 0.543
NFA_130
Hypothetical protein.
       0.514
NFA_140
Hypothetical protein.
       0.503
NFA_150
Hypothetical protein.
       0.503
NFA_160
Hypothetical protein.
       0.503
NFA_170
Hypothetical protein.
       0.503
NFA_180
Hypothetical protein.
       0.461
NFA_90
Putative phage integrase; Belongs to the 'phage' integrase family.
       0.431
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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