Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NFA_13360Putative anti-anti-sigma factor. (125 aa)    
Predicted Functional Partners:
NFA_1580
Hypothetical protein.
 
 
 0.986
NFA_32150
Putative histidine kinase.
 
 
 0.980
NFA_43810
Hypothetical protein.
 
 
 0.700
NFA_18850
Hypothetical protein.
 
 
 0.674
NFA_31610
Hypothetical protein.
 
   
 0.644
NFA_36040
Putative anti-sigma factor.
 
 
 0.640
NFA_27100
Putative anti-sigma factor.
 
 
 0.627
NFA_2970
Hypothetical protein.
 
 
 0.620
NFA_1560
Putative anti-sigma factor.
 
 
 0.614
rsbT
Putative sigma activity regulating kinase.
  
 
 0.604
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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