Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NFA_1600Putative cation transporter. (750 aa)    
Predicted Functional Partners:
NFA_49020
Putative metal-binding protein.
 
 
 0.899
NFA_1610
Hypothetical protein.
   
 0.829
NFA_25660
Hypothetical protein.
  
 
 0.803
NFA_8420
Hypothetical protein.
 
  
 0.592
NFA_1620
Hypothetical protein.
       0.533
sodC
Putative superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
    
 0.528
NFA_1630
Putative transcriptional regulator.
       0.521
NFA_27140
Putative cation transporter ATPase.
 
 
0.470
NFA_780
Putative reductase/deaminase.
  
    0.444
NFA_1580
Hypothetical protein.
  
  
 0.442
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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