Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NFA_16680Hypothetical protein. (150 aa)    
Predicted Functional Partners:
glnA2
Putative glutamine synthetase.
  
 
 0.731
NFA_10970
Hypothetical protein.
  
     0.700
NFA_17270
Putative cytochrome c component.
  
     0.688
ctaF
Hypothetical protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.679
NFA_51560
Putative cytochrome c biogenesis membrane protein.
  
     0.516
NFA_16140
Hypothetical protein.
  
     0.509
crgA
Hypothetical protein; Involved in cell division; Belongs to the CrgA family.
  
     0.498
NFA_35670
Putative cytochrome oxidase assembly protein.
 
   
 0.497
NFA_53790
Putative dehydratase.
  
    0.491
NFA_17560
Hypothetical protein.
  
     0.475
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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