Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aftAPutative arabinofuranosyltransferase. (700 aa)    
Predicted Functional Partners:
NFA_37340
Hypothetical protein.
  
   
 0.896
NFA_1930
Putative arabinosyltransferase.
 
  
 0.894
aftB
Putative terminal arabinosyltransferase.
 
   
 0.878
NFA_1920
Putative arabinosyltransferase.
 
  
 0.850
NFA_17810
Putative arabinosyltransferase.
 
  
 0.838
NFA_1970
Putative oxidoreductase.
 
   
 0.837
NFA_1960
Putative short chain dehydrogenase.
 
   
 0.818
NFA_42830
Hypothetical protein.
  
     0.767
NFA_54700
Putative membrane protein.
  
   
 0.739
NFA_1980
Hypothetical protein.
 
   
 0.735
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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