Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NFA_1970Putative oxidoreductase. (493 aa)    
Predicted Functional Partners:
NFA_1960
Putative short chain dehydrogenase.
 
  
 0.988
NFA_1980
Hypothetical protein.
 
   
 0.933
NFA_1790
Putative polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
 
  
 0.900
aftA
Putative arabinofuranosyltransferase.
 
   
 0.837
NFA_31570
Putative short chain dehydrogenase.
 
  
 0.791
NFA_1930
Putative arabinosyltransferase.
 
  
 0.717
NFA_17810
Putative arabinosyltransferase.
 
  
 0.656
NFA_1920
Putative arabinosyltransferase.
 
  
 0.644
inhA
Putative enoyl-ACP reductase.
  
  
 0.581
plsB
Putative glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family.
   
 0.552
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.