Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NFA_22720Hypothetical protein. (117 aa)    
Predicted Functional Partners:
NFA_22710
Putative lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.982
fadE22
Putative acyl-CoA dehydrogenase.
 
    0.919
NFA_22690
Putative phosphotransferase.
 
     0.884
NFA_22670
Putative short chain dehydrogenase.
 
 
   0.838
NFA_22630
Putative transcriptional regulator.
 
     0.834
NFA_22660
Putative short chain dehydrogenase.
 
 
   0.812
echA12
Putative enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  
 0.798
NFA_22640
Putative acyl-CoA synthetase.
 
    0.781
NFA_22650
Putative dehydrogenase.
 
     0.739
fadE21
Putative acyl-CoA dehydrogenase.
  
    0.708
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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