Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NFA_23960Hypothetical protein. (335 aa)    
Predicted Functional Partners:
NFA_23950
Putative glycosyltransferase.
 
  
 0.958
NFA_23940
Hypothetical protein.
 
  
 0.955
NFA_23920
Putative sugar kinase.
 
   
 0.954
NFA_23970
Putative short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.954
NFA_23910
Putative glycosyltransferase.
 
  
 0.952
NFA_23930
Putative sugar isomerase.
 
   
 0.944
NFA_23980
Putative glycosyltransferase.
 
     0.929
NFA_23990
Putative glycosyltransferase.
 
  
 0.872
NFA_32610
Putative glycosyltransferase.
 
  
 0.804
NFA_31090
Putative glycosyltransferase.
 
  
 0.803
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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