Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
NFA_25550Putative oxidoreductase. (238 aa)    
Predicted Functional Partners:
NFA_25540
Putative short chain dehydrogenase.
       0.558
NFA_25530
Hypothetical protein.
       0.521
NFA_4710
Putative oxidoreductase.
  
     0.517
fadE27
Putative acyl-CoA dehydrogenase.
  
  
 0.512
NFA_40950
Putative reductase.
  
     0.512
NFA_20890
Putative oxidoreductase.
  
     0.497
NFA_25570
Putative transcriptional regulator.
       0.494
NFA_43660
Putative phenol hydroxylase small subunit.
  
     0.472
NFA_32480
Putative hydroxylase.
  
     0.459
NFA_30550
Putative phenol hydroxylase small subunit.
  
     0.423
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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