STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NFA_27770Putative 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (500 aa)    
Predicted Functional Partners:
NFA_27790
Putative 4-hydroxyphenylacetate isomerase/decarboxylase.
 
 
 0.932
NFA_27760
Putative 3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.918
NFA_27780
Putative transcriptional regulator.
 
   
 0.840
NFA_27750
Putative hydratase.
 
  
 0.832
NFA_27740
Putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.791
NFA_27810
Putative monooxygenase.
 
 
 0.754
NFA_23550
Putative proline dehydrogenase.
 
 
 0.679
gabD
Putative succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
    
0.578
NFA_27800
Putative transporter.
 
    0.556
NFA_30490
Putative catechol 2,3-dioxygenase.
 
  
 0.493
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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