STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NFA_32080Putative dehydrogenase. (400 aa)    
Predicted Functional Partners:
poxB
Putative pyruvate oxidase; Belongs to the TPP enzyme family.
  
 
 0.942
pykA
Putative pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.931
NFA_2230
Putative dehydrogenase.
  
  
 
0.921
lldD
Putative L-lactate dehydrogenase.
  
  
 
0.919
NFA_36600
Putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit.
    
 0.916
NFA_41910
Putative pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
  
 
 0.909
NFA_47090
Putative malate dehydrogenase.
    
 0.908
NFA_32090
Hypothetical protein.
 
  
 0.907
NFA_36610
Putative 2-oxoglutarate ferredoxin oxidoreductase beta subunit.
    
 0.907
NFA_10210
Putative branched-chain alpha-keto acid dehydrogenase component.
  
 
 0.905
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.