Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NFA_32090Hypothetical protein. (233 aa)    
Predicted Functional Partners:
NFA_22310
Putative glycosyltransferase.
 
  
 0.925
NFA_50660
Putative glycosyltransferase.
 
  
 0.910
NFA_32080
Putative dehydrogenase.
 
  
 0.879
NFA_22340
Hypothetical protein.
 
  
 0.837
NFA_34420
Hypothetical protein.
 
  
 0.836
NFA_34430
Hypothetical protein.
 
  
 0.787
NFA_22330
Hypothetical protein.
 
  
 0.785
NFA_32100
Putative transcriptional regulator.
 
   
 0.738
NFA_17500
Putative glycosyltransferase.
  
  
 0.529
NFA_24100
Putative glycosyltransferase.
  
  
 0.529
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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