Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rsbTPutative sigma activity regulating kinase. (131 aa)    
Predicted Functional Partners:
rsbS
Putative sigma activity regulator.
 
 
 0.984
rsbX
Putative sigma activity regulating serine phosphatase.
 
 
 0.981
rsbR
Putative sigma activity regulator.
 
 
 0.979
NFA_32150
Putative histidine kinase.
 
 
 0.969
NFA_11600
Putative sigma activity regulator.
 
 
 0.920
NFA_1580
Hypothetical protein.
 
 
 0.809
NFA_1550
Putative anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.704
NFA_1410
Hypothetical protein.
  
 
 0.687
NFA_34230
Putative anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.670
NFA_32890
Hypothetical protein.
 
 
 0.659
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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