STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NFA_33980Putative transcriptional regulator. (299 aa)    
Predicted Functional Partners:
NFA_22190
Putative allophanate hydrolase.
  
    0.745
NFA_33970
Putative dehydrogenase.
       0.613
NFA_7470
Putative protease.
 
     0.603
NFA_33960
Hypothetical protein.
 
     0.514
NFA_3140
Hypothetical protein.
  
     0.488
NFA_29670
Hypothetical protein.
  
     0.472
NFA_25950
Putative transcriptional regulator.
  
     0.453
NFA_1620
Hypothetical protein.
  
  
 0.444
NFA_11910
Hypothetical protein.
  
     0.424
NFA_24170
Putative acyl-CoA synthetase.
  
 
   0.424
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.