Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NFA_35010Putative transcriptional regulator. (202 aa)    
Predicted Functional Partners:
NFA_35020
Hypothetical protein.
 
     0.918
NFA_35000
Putative transcriptional regulator.
       0.678
NFA_29670
Hypothetical protein.
  
     0.604
NFA_39640
Hypothetical protein.
  
     0.577
NFA_48820
Hypothetical protein.
  
     0.560
NFA_40370
Hypothetical protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
    0.543
NFA_1010
Hypothetical protein.
  
   
 0.530
NFA_15230
Hypothetical protein.
  
     0.524
NFA_15220
Hypothetical protein.
  
     0.522
NFA_28630
Hypothetical protein.
  
     0.503
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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