Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NFA_370Hypothetical protein. (108 aa)    
Predicted Functional Partners:
NFA_390
Putative phage terminase large subunit.
 
  
 0.905
NFA_380
Putative phage terminase small subunit.
 
    0.896
NFA_410
Putative phage portal protein.
 
  
 0.892
NFA_420
Putative prohead protease.
 
     0.848
NFA_430
Putative phage head.
 
  
 0.792
NFA_510
Putative phage tail.
 
     0.744
NFA_29600
Putative transcriptional regulator.
  
     0.713
NFA_39130
Putative phage tail.
  
     0.692
NFA_330
Hypothetical protein.
       0.596
NFA_340
Hypothetical protein.
       0.596
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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