Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NFA_10300 | NFA_28980 | NFA_10300 | NFA_28980 | Putative monooxygenase. | Hypothetical protein. | 0.658 |
NFA_10300 | NFA_34240 | NFA_10300 | NFA_34240 | Putative monooxygenase. | Putative oxidoreductase. | 0.685 |
NFA_10300 | NFA_5240 | NFA_10300 | NFA_5240 | Putative monooxygenase. | Putative oxidoreductase. | 0.705 |
NFA_10300 | fbiA | NFA_10300 | NFA_46210 | Putative monooxygenase. | Hypothetical protein; Catalyzes the transfer of the phosphoenolpyruvate moiety from enoylpyruvoyl-2-diphospho-5'-guanosine (EPPG) to 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) with the formation of dehydro coenzyme F420-0 and GMP. | 0.719 |
NFA_10300 | fbiB | NFA_10300 | NFA_46200 | Putative monooxygenase. | Hypothetical protein; Bifunctional enzyme that catalyzes the GTP-dependent successive addition of two or more gamma-linked L-glutamates to the L- lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives, and the FMNH2- dependent reduction of dehydro-F420-0 to form F420-0. | 0.762 |
NFA_10300 | fbiC | NFA_10300 | NFA_47520 | Putative monooxygenase. | Hypothetical protein; Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) from 5-amino-6-(D-ribitylamino)uracil and L-tyrosine; In the C-terminal section; belongs to the radical SAM superfamily. CofH family. | 0.548 |
NFA_10300 | fbiD | NFA_10300 | NFA_42070 | Putative monooxygenase. | Hypothetical protein; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor. | 0.615 |
NFA_23300 | NFA_28980 | NFA_23300 | NFA_28980 | Putative dehydrogenase. | Hypothetical protein. | 0.673 |
NFA_23300 | NFA_5240 | NFA_23300 | NFA_5240 | Putative dehydrogenase. | Putative oxidoreductase. | 0.663 |
NFA_23300 | fbiA | NFA_23300 | NFA_46210 | Putative dehydrogenase. | Hypothetical protein; Catalyzes the transfer of the phosphoenolpyruvate moiety from enoylpyruvoyl-2-diphospho-5'-guanosine (EPPG) to 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) with the formation of dehydro coenzyme F420-0 and GMP. | 0.851 |
NFA_23300 | fbiB | NFA_23300 | NFA_46200 | Putative dehydrogenase. | Hypothetical protein; Bifunctional enzyme that catalyzes the GTP-dependent successive addition of two or more gamma-linked L-glutamates to the L- lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives, and the FMNH2- dependent reduction of dehydro-F420-0 to form F420-0. | 0.774 |
NFA_23300 | fbiC | NFA_23300 | NFA_47520 | Putative dehydrogenase. | Hypothetical protein; Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) from 5-amino-6-(D-ribitylamino)uracil and L-tyrosine; In the C-terminal section; belongs to the radical SAM superfamily. CofH family. | 0.570 |
NFA_23300 | fbiD | NFA_23300 | NFA_42070 | Putative dehydrogenase. | Hypothetical protein; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor. | 0.835 |
NFA_28980 | NFA_10300 | NFA_28980 | NFA_10300 | Hypothetical protein. | Putative monooxygenase. | 0.658 |
NFA_28980 | NFA_23300 | NFA_28980 | NFA_23300 | Hypothetical protein. | Putative dehydrogenase. | 0.673 |
NFA_28980 | NFA_34240 | NFA_28980 | NFA_34240 | Hypothetical protein. | Putative oxidoreductase. | 0.630 |
NFA_28980 | NFA_5240 | NFA_28980 | NFA_5240 | Hypothetical protein. | Putative oxidoreductase. | 0.671 |
NFA_28980 | fbiA | NFA_28980 | NFA_46210 | Hypothetical protein. | Hypothetical protein; Catalyzes the transfer of the phosphoenolpyruvate moiety from enoylpyruvoyl-2-diphospho-5'-guanosine (EPPG) to 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) with the formation of dehydro coenzyme F420-0 and GMP. | 0.867 |
NFA_28980 | fbiB | NFA_28980 | NFA_46200 | Hypothetical protein. | Hypothetical protein; Bifunctional enzyme that catalyzes the GTP-dependent successive addition of two or more gamma-linked L-glutamates to the L- lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives, and the FMNH2- dependent reduction of dehydro-F420-0 to form F420-0. | 0.818 |
NFA_28980 | fbiC | NFA_28980 | NFA_47520 | Hypothetical protein. | Hypothetical protein; Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) from 5-amino-6-(D-ribitylamino)uracil and L-tyrosine; In the C-terminal section; belongs to the radical SAM superfamily. CofH family. | 0.723 |
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