STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NFA_47300Hypothetical protein. (159 aa)    
Predicted Functional Partners:
NFA_47290
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.929
tatB
Hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
 
    0.862
NFA_47310
Putative protease.
 
   
 0.846
NFA_56580
Hypothetical protein.
 
   
 0.773
NFA_31610
Hypothetical protein.
  
     0.762
NFA_47960
Hypothetical protein.
  
     0.756
NFA_48230
Hypothetical protein.
  
     0.756
NFA_47940
Hypothetical protein.
  
     0.749
NFA_41210
Hypothetical protein.
  
     0.745
NFA_9540
Hypothetical protein.
  
     0.743
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.