Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NFA_5000Hypothetical protein. (168 aa)    
Predicted Functional Partners:
NFA_50920
Hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
     0.771
NFA_4970
Putative sigma factor; Belongs to the sigma-70 factor family.
 
  
 0.731
NFA_4990
Hypothetical protein.
 
     0.719
NFA_26100
Putative sigma factor; Belongs to the sigma-70 factor family.
 
  
 0.570
NFA_16260
Putative sigma factor; Belongs to the sigma-70 factor family.
 
  
 0.543
NFA_27380
Putative sigma factor; Belongs to the sigma-70 factor family.
 
  
 0.539
NFA_4980
Putative esterase.
       0.537
NFA_5010
Putative monooxygenase.
  
    0.513
NFA_28100
Putative sigma factor; Belongs to the sigma-70 factor family.
 
  
 0.479
NFA_22150
Putative sigma factor; Belongs to the sigma-70 factor family.
 
  
 0.474
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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