Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NFA_510Putative phage tail. (1186 aa)    
Predicted Functional Partners:
NFA_430
Putative phage head.
 
   
 0.879
NFA_410
Putative phage portal protein.
 
   
 0.861
NFA_420
Putative prohead protease.
 
   
 0.831
NFA_530
Putative phage tail.
       0.800
NFA_505
Hypothetical protein.
       0.791
NFA_500
Hypothetical protein.
       0.779
NFA_520
Putative phage tail.
       0.779
NFA_580
Hypothetical protein.
       0.765
NFA_540
Putative phage tail.
       0.764
NFA_550
Putative phage tail.
       0.764
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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