Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NFA_51100Putative ABC transporter ATP-binding protein. (376 aa)    
Predicted Functional Partners:
yrbE5B
Putative YrbE family protein.
 
 0.995
yrbE5A
Putative YrbE family protein.
 
 0.995
yrbE1A
Putative YrbE family protein.
 
 0.992
yrbE1B
Putative YrbE family protein.
 
 0.992
mce5E
Putative Mce family protein.
 
 
 0.986
yrbE2A
Putative YrbE family protein.
 
 0.980
yrbE2B
Putative YrbE family protein.
 
 0.980
yrbE3B
Putative YrbE family protein.
 
 0.980
yrbE4B
Putative YrbE family protein.
 
 0.980
yrbE4A
Putative YrbE family protein.
 
 0.980
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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