Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NFA_54580Putative lipase. (443 aa)    
Predicted Functional Partners:
NFA_54590
Hypothetical protein.
       0.788
NFA_21060
Hypothetical protein.
  
     0.658
NFA_54160
Putative protease.
  
  
 0.566
NFA_55770
Hypothetical protein.
  
    0.537
NFA_51000
Hypothetical protein.
  
 
   0.524
fbpA
Putative mycolyltransferase.
 
    0.461
NFA_11830
Hypothetical protein.
  
     0.457
NFA_52320
Hypothetical protein.
  
     0.450
NFA_32570
Hypothetical protein.
  
     0.438
fadA11
Putative acyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.420
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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