STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKH25808.1IS607 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)    
Predicted Functional Partners:
OKH25809.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.946
NIES1031_15450
Glutamine synthetase; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.659
def-2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.547
OKH25917.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.532
OKH24281.1
DNA sulfur modification protein DndE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.462
OKH21405.1
DNA phosphorothioation system restriction enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.462
OKH24280.1
DNA sulfur modification protein DndD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.423
OKH24275.1
Dnd system-associated protein 4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.405
Your Current Organism:
Chroogloeocystis siderophila
NCBI taxonomy Id: 247279
Other names: C. siderophila 5.2 s.c.1, Chroogloeocystis siderophila 5.2 s.c.1, cyanobacterium 5.2 s.c.1, unidentified bacterium ATCC BAA-845
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