STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB60981.1Conserved hypothetical protein; Belongs to the bacterial histone-like protein family. (106 aa)    
Predicted Functional Partners:
GAB62838.1
DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
     0.774
GAB60982.1
Conserved hypothetical protein.
       0.742
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
  
 0.607
GAB63228.1
Cold-shock protein.
  
 
 0.577
GAB62045.1
Conserved hypothetical protein.
    
   0.546
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
  
 0.477
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
  
 
   0.474
GAB63152.1
Chorismate mutase.
     
 0.456
GAB61164.1
50S ribosomal protein L32.
  
  
 0.453
cas1
CRISPR-associated protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
    
   0.444
Your Current Organism:
Jettenia caeni
NCBI taxonomy Id: 247490
Other names: C. Jettenia caeni, Candidatus Jettenia caeni, planctomycete KSU-1, strain KSU-1
Server load: low (16%) [ZH]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.