STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB62161.1Conserved hypothetical protein. (274 aa)    
Predicted Functional Partners:
GAB62162.1
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.989
GAB61140.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.954
GAB63618.1
Conserved hypothetical protein.
  
 
 0.806
GAB61957.1
Serine/threonine protein kinase.
    
 
 0.581
GAB62160.1
Conserved hypothetical protein.
       0.504
GAB62157.1
Pyruvate ferredoxin oxidoreductase alpha subunit.
       0.441
GAB62158.1
Pyruvate ferredoxin oxidoreductase delta subunit.
       0.441
GAB62159.1
Pyruvate ferredoxin oxidoreductase gamma subunit.
       0.441
Your Current Organism:
Jettenia caeni
NCBI taxonomy Id: 247490
Other names: C. Jettenia caeni, Candidatus Jettenia caeni, planctomycete KSU-1, strain KSU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.