STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB62317.1Conserved hypothetical protein. (418 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.962
GAB63919.1
Conserved hypothetical protein.
   
  0.958
GAB61459.1
Conserved hypothetical protein.
   
  0.953
GAB62369.1
Conserved hypothetical protein.
   
  0.953
GAB61525.1
Putative RNA polymerase alpha subunit.
 
0.890
GAB64290.1
Conserved hypothetical protein.
 
0.829
GAB64125.1
Conserved hypothetical protein.
 
0.807
GAB61912.1
Two-component sensor kinase.
  
 0.793
GAB62090.1
Chaperone protein DnaK; Belongs to the heat shock protein 70 family.
  
 0.787
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.787
Your Current Organism:
Jettenia caeni
NCBI taxonomy Id: 247490
Other names: C. Jettenia caeni, Candidatus Jettenia caeni, planctomycete KSU-1, strain KSU-1
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