STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB63259.1Hypothetical protein. (56 aa)    
Predicted Functional Partners:
GAB63248.1
Conserved hypothetical protein.
 
     0.801
GAB63221.1
Hypothetical protein.
  
     0.774
GAB63246.1
Hypothetical protein.
  
     0.774
GAB63260.1
Glycoside hydrolase.
       0.773
GAB62973.1
Hypothetical protein.
  
     0.768
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.685
GAB63261.1
Putative heme protein.
       0.651
GAB62900.1
Trehalose synthase.
     
  0.492
GAB62724.1
Putative phosphohydrolase.
     
  0.423
GAB62725.1
Putative phosphohydrolase.
     
  0.423
Your Current Organism:
Jettenia caeni
NCBI taxonomy Id: 247490
Other names: C. Jettenia caeni, Candidatus Jettenia caeni, planctomycete KSU-1, strain KSU-1
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