STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB63307.1Putative transferase. (220 aa)    
Predicted Functional Partners:
GAB61525.1
Putative RNA polymerase alpha subunit.
  
 0.953
GAB64290.1
Conserved hypothetical protein.
 
 0.929
GAB61611.1
Putative glycosyl transferase.
 
 
 0.926
GAB64077.1
Glycosyltransferase.
 
 
 0.923
GAB64162.1
Diguanylate cyclase/phosphodiesterase.
  
 
 0.921
GAB63388.1
Putative glycosyltransferase.
  
 0.919
GAB61189.1
Diguanylate cyclase/phosphodiesterase.
  
 0.918
GAB61912.1
Two-component sensor kinase.
  
 0.901
GAB62491.1
Two-component sensor kinase.
 
 
 0.898
GAB63321.1
Two-component sensor kinase.
 
 0.876
Your Current Organism:
Jettenia caeni
NCBI taxonomy Id: 247490
Other names: C. Jettenia caeni, Candidatus Jettenia caeni, planctomycete KSU-1, strain KSU-1
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