STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB64327.1DEAD/DEAH box helicase. (995 aa)    
Predicted Functional Partners:
GAB64324.1
DNA methylase.
 
   0.949
GAB64325.1
Putative restriction endonuclease.
  
 0.926
GAB62940.1
Putative DNA methylase.
  
   0.663
GAB64326.1
Putative transcriptional regulator.
  
    0.648
GAB63482.1
Methyltransferase.
  
   0.623
GAB62267.1
Type I restriction modification enzyme M subunit.
   
   0.615
GAB62741.1
Truncated DNA methyltransferase.
   
   0.615
GAB62742.1
Truncated DNA methyltransferase.
   
   0.615
GAB63475.1
Truncated methyltransferase.
   
   0.615
GAB63476.1
Truncated methyltransferase.
   
   0.615
Your Current Organism:
Jettenia caeni
NCBI taxonomy Id: 247490
Other names: C. Jettenia caeni, Candidatus Jettenia caeni, planctomycete KSU-1, strain KSU-1
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